RESEARCH: Β-LACTMASES
FOLDING PROJECT #14520 PROFILE

PROJECT TEAM

Manager(s): Neha Vithani
Institution: Washington University in St. Louis

WORK UNIT INFO

Atoms: 34,514
Core: GRO_A7
Status: Public

Related Projects

TLDR; PROJECT SUMMARY AI BETA

This project relates to understanding how TEM-1 beta-lactamase breaks down penicillin and related antibiotics, making bacteria resistant. Researchers are studying the protein's structure to find areas that could be blocked by drugs, potentially leading to new treatments for drug-resistant infections.

Note: This TLDR is a simplication and may not be 100% accurate.

OFFICAL PROJECT DESCRIPTION

Beta lactamases are proteins which degrade penicillin and related antibiotics, enabling pathogenic bacteria to resist their effects.

We are modeling the dynamics of TEM-1 beta-lactamase to look for pockets in the protein which could bind small molecules and prevent it from functioning.

Drugs which could target these pockets could therefore help to treat drug resistant infections.

RELATED TERMS GLOSSARY AI BETA

Note: Glossary items are a high level summary and may not be 100% accurate.

Beta lactamases

Enzymes that break down beta-lactam antibiotics.

Scientific: Biotechnology
Pharmacology / Antibiotic Resistance

Beta lactamases are proteins produced by bacteria that can destroy penicillin and other beta-lactam antibiotics. This process allows bacteria to resist the effects of these drugs, making infections harder to treat. Researchers are studying beta lactamases to develop new drugs that can block their activity and help overcome antibiotic resistance.


Penicillin

A type of antibiotic.

Scientific: Biotechnology
Pharmacology / Antibiotic Resistance

Penicillin is a widely used class of antibiotics that work by inhibiting the growth of bacteria. It was one of the first discovered and revolutionized the treatment of bacterial infections. However, some bacteria have evolved to produce beta-lactamases, enzymes that can break down penicillin and other beta-lactam antibiotics, leading to antibiotic resistance.


TEM-1

A type of beta-lactamase enzyme.

Technical: Pharmaceuticals
Biotechnology / Protein Engineering

TEM-1 is a specific type of beta-lactamase enzyme that is commonly found in bacteria. It's known for its ability to break down penicillin and related antibiotics, contributing to antibiotic resistance. Scientists are studying TEM-1 to understand how it works and develop ways to inhibit its activity.


Pockets

Specific regions on a protein surface where molecules can bind.

Technical: Pharmaceuticals
Biotechnology / Protein Structure

Pockets are cavities or depressions found on the surface of proteins. They are important for protein function as they can bind to other molecules, such as drugs. By understanding the structure and shape of these pockets, scientists can design drugs that fit into them and modulate protein activity.

PROJECT FOLDING PPD AVERAGES BY GPU

Data as of Tuesday, 14 April 2026 06:33:07
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PROJECT FOLDING PPD AVERAGES BY CPU BETA

Data as of Tuesday, 14 April 2026 06:33:07
Rank
Project
CPU Model Logical
Processors (LP)
PPD-PLP
AVG PPD per 1 LP
ALL LP-PPD
(Estimated)
Make
1 RYZEN 9 3950X 16-CORE 32 22,171 709,472 AMD
2 RYZEN 9 5950X 16-CORE 32 20,353 651,296 AMD
3 RYZEN 9 3900X 12-CORE 24 16,778 402,672 AMD
4 CORE I9-9900K CPU @ 3.60GHZ 16 17,614 281,824 Intel
5 RYZEN 7 5800X 8-CORE 16 13,475 215,600 AMD
6 RYZEN 7 3700X 8-CORE 16 11,424 182,784 AMD
7 RYZEN 7 3800X 8-CORE 16 11,269 180,304 AMD
8 RYZEN 5 3600 6-CORE 12 13,238 158,856 AMD
9 RYZEN 5 1600X SIX-CORE 12 11,905 142,860 AMD
10 RYZEN 7 2700X EIGHT-CORE 16 5,546 88,736 AMD
11 RYZEN 7 1700 EIGHT-CORE 16 3,853 61,648 AMD
12 CORE I7-4790K CPU @ 4.00GHZ 8 7,312 58,496 Intel
13 CORE I7-8705G CPU @ 3.10GHZ 8 7,129 57,032 Intel
14 RYZEN 5 2600 SIX-CORE 12 4,099 49,188 AMD
15 CORE I5-7600 CPU @ 3.50GHZ 4 10,855 43,420 Intel
16 XEON CPU E5-2650 0 @ 2.00GHZ 16 2,588 41,408 Intel
17 CORE I5-6500 CPU @ 3.20GHZ 4 9,898 39,592 Intel
18 PHENOM II X4 965 4 3,777 15,108 AMD
19 CORE I3-6006U CPU @ 2.00GHZ 4 2,317 9,268 Intel
20 CELERON(R) CPU G550 @ 2.60GHZ 2 1,854 3,708 Intel
21 A8-6410 APU 4 651 2,604 AMD