RESEARCH: Β-LACTMASES
FOLDING PROJECT #16459 PROFILE

PROJECT TEAM

Manager(s): Sukrit Singh
Institution: Washington University in St. Louis

WORK UNIT INFO

Atoms: 33,296
Core: GRO_A7
Status: Public

Related Projects

TLDR; PROJECT SUMMARY AI BETA

This project studies an ancient type of enzyme called beta-lactamase which breaks down penicillin-like antibiotics. By comparing it to modern versions, scientists hope to find 'pockets' in the enzyme that could be targeted by new drugs to fight antibiotic resistance.

Note: This TLDR is a simplication and may not be 100% accurate.

OFFICAL PROJECT DESCRIPTION

This project studies the R241F mutant of Tem-1 β-Lactmase β-Lactmases are enzymes which break down penicillin-like antibiotics.

This is the most common method by which bacteria become resistant to such antibiotics.

This project is simulating the most probable common ancestor (dating back to around 2 billion years ago) of modern day Gram Negative beta-lactamases.

We hope to understand the funtional significance of various cryptic pockets found in these enzymes by comparing these results to simulations of modern beta-lactamases.

Finding such functional pockets could enable us to target these enzymes with drugs that might combat this form of antibiotic resistance.

RELATED TERMS GLOSSARY AI BETA

Note: Glossary items are a high level summary and may not be 100% accurate.

R241F mutant

A genetically modified version of the Tem-1 beta-lactamase enzyme with a specific amino acid change (R241F).

Technical: Biotechnology
Microbiology / Antibiotic Resistance

The R241F mutant is a laboratory-created version of the Tem-1 beta-lactamase enzyme. Scientists made a specific change to its genetic code, replacing an arginine (R) with a phenylalanine (F) at position 241. This mutation alters the enzyme's structure and function, making it more resistant to certain antibiotics.


Tem-1 beta-lactamase

A type of enzyme produced by bacteria that breaks down penicillin and other beta-lactam antibiotics.

Technical: Biotechnology
Microbiology / Antibiotic Resistance

Tem-1 beta-lactamase is a bacterial enzyme that destroys penicillin and related antibiotics. Bacteria produce this enzyme to resist the effects of these medications. This enzyme works by breaking down the beta-lactam ring, which is essential for the antibiotic's effectiveness.


beta-Lactamases

Enzymes produced by bacteria that hydrolyze the beta-lactam ring of penicillin and other antibiotics.

Scientific: Biotechnology
Microbiology / Antibiotic Resistance

Beta-lactamases are enzymes made by bacteria to fight off penicillin and similar antibiotics. These enzymes break down the crucial beta-lactam ring in these medications, rendering them ineffective. The widespread presence of beta-lactamases is a major challenge in treating bacterial infections.


Antibiotics

Medicinal substances that inhibit the growth or kill bacteria.

Scientific: Pharmaceutical
Medicine / Infectious Diseases

Antibiotics are drugs specifically designed to fight bacterial infections. They work by interfering with various essential processes in bacteria, such as cell wall formation or protein synthesis. However, overuse and misuse of antibiotics have led to the emergence of antibiotic-resistant bacteria, posing a significant public health threat.


Gram Negative

A classification of bacteria based on their cell wall structure, which does not retain the crystal violet dye during a staining procedure.

Scientific: Biotechnology
Microbiology / Bacterial Classification

Gram-negative bacteria are classified by their unique cell wall structure. During a specific staining process called Gram staining, these bacteria do not retain the purple crystal violet dye and appear pink or red instead. This difference in staining reflects variations in their cell wall composition.

PROJECT FOLDING PPD AVERAGES BY GPU

Data as of Tuesday, 14 April 2026 06:31:27
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PROJECT FOLDING PPD AVERAGES BY CPU BETA

Data as of Tuesday, 14 April 2026 06:31:27
Rank
Project
CPU Model Logical
Processors (LP)
PPD-PLP
AVG PPD per 1 LP
ALL LP-PPD
(Estimated)
Make
1 RYZEN THREADRIPPER 3960X 24-CORE 48 13,591 652,368 AMD
2 RYZEN 9 3950X 16-CORE 32 15,263 488,416 AMD
3 RYZEN 9 5950X 16-CORE 32 13,877 444,064 AMD
4 RYZEN 9 5900X 12-CORE 24 18,079 433,896 AMD
5 RYZEN 9 3900XT 12-CORE 24 14,426 346,224 AMD
6 CORE I9-9980XE CPU @ 3.00GHZ 36 8,693 312,948 Intel
7 RYZEN THREADRIPPER 2970WX 24-CORE 48 6,517 312,816 AMD
8 RYZEN 9 3900X 12-CORE 24 12,391 297,384 AMD
9 CORE I9-9900K CPU @ 3.60GHZ 16 16,464 263,424 Intel
10 CORE I9-10900K CPU @ 3.70GHZ 20 10,846 216,920 Intel
11 RYZEN 7 4800H 16 9,048 144,768 AMD
12 RYZEN 7 3800X 8-CORE 16 8,579 137,264 AMD
13 RYZEN 7 3700X 8-CORE 16 8,270 132,320 AMD
14 RYZEN 5 3600X 6-CORE 12 10,613 127,356 AMD
15 RYZEN THREADRIPPER 1920X 12-CORE 24 5,218 125,232 AMD
16 RYZEN 5 3600 6-CORE 12 10,180 122,160 AMD
17 RYZEN 5 3600XT 6-CORE 12 9,699 116,388 AMD
18 XEON CPU E5-2690 V2 @ 3.00GHZ 20 5,814 116,280 Intel
19 CORE I7-9700K CPU @ 3.60GHZ 8 13,994 111,952 Intel
20 RYZEN 7 2700X EIGHT-CORE 16 6,275 100,400 AMD
21 XEON CPU E5-2660 0 @ 2.20GHZ 32 3,053 97,696 Intel
22 CORE I7-9700 CPU @ 3.00GHZ 8 11,937 95,496 Intel
23 RYZEN 5 3500 6-CORE 6 13,572 81,432 AMD
24 XEON CPU E5-2620 V2 @ 2.10GHZ 24 2,486 59,664 Intel
25 RYZEN 5 2600X SIX-CORE 12 4,950 59,400 AMD
26 RYZEN 7 1700 EIGHT-CORE 16 3,336 53,376 AMD
27 CORE I7-4790K CPU @ 4.00GHZ 8 5,934 47,472 Intel
28 CORE I7-8705G CPU @ 3.10GHZ 8 5,528 44,224 Intel
29 CORE I5-7600 CPU @ 3.50GHZ 4 10,726 42,904 Intel
30 RYZEN 5 2600 SIX-CORE 12 3,014 36,168 AMD
31 CORE I7-6700T CPU @ 2.80GHZ 8 3,859 30,872 Intel
32 CORE I5-6500 CPU @ 3.20GHZ 4 7,542 30,168 Intel
33 CORE I7-8550U CPU @ 1.80GHZ 8 3,172 25,376 Intel
34 CORE I7-3770 CPU @ 3.40GHZ 8 3,101 24,808 Intel
35 XEON E-2124G CPU @ 3.40GHZ 4 5,104 20,416 Intel
36 RYZEN 3 2200G 4 3,865 15,460 AMD
37 PHENOM II X4 965 4 3,013 12,052 AMD
38 CORE I5-4300U CPU @ 1.90GHZ 4 2,451 9,804 Intel
39 XEON CPU L5420 @ 2.50GHZ 4 2,289 9,156 Intel
40 FX-9590 EIGHT-CORE 8 906 7,248 AMD
41 FX-8320 EIGHT-CORE 8 469 3,752 AMD