RESEARCH: Β-LACTMASES
FOLDING PROJECT #16457 PROFILE

PROJECT TEAM

Manager(s): Sukrit Singh
Institution: Washington University in St. Louis

WORK UNIT INFO

Atoms: 33,227
Core: GRO_A7
Status: Public

Related Projects

TLDR; PROJECT SUMMARY AI BETA

This project looks at an ancient enzyme that breaks down penicillin-like antibiotics. By comparing it to modern versions, scientists hope to find hidden pockets within the enzyme that could be targeted by new drugs to fight antibiotic resistance.

Note: This TLDR is a simplication and may not be 100% accurate.

OFFICAL PROJECT DESCRIPTION

This project studies the E240A mutant of Tem-1 β-Lactmase β-Lactmases are enzymes which break down penicillin-like antibiotics.

This is the most common method by which bacteria become resistant to such antibiotics.

This project is simulating the most probable common ancestor (dating back to around 2 billion years ago) of modern day Gram Negative beta-lactamases.

We hope to understand the funtional significance of various cryptic pockets found in these enzymes by comparing these results to simulations of modern beta-lactamases.

Finding such functional pockets could enable us to target these enzymes with drugs that might combat this form of antibiotic resistance.

RELATED TERMS GLOSSARY AI BETA

Note: Glossary items are a high level summary and may not be 100% accurate.

E240A

Amino acid mutation in Tem-1 beta-lactamase

Acronym: Pharmaceutical Research
Biotechnology / Molecular Biology

E240A is a specific amino acid change (mutation) within the Tem-1 beta-lactamase enzyme. This type of mutation can alter the enzyme's function, potentially making it more resistant to certain antibiotics.


Tem-1

A type of beta-lactamase enzyme commonly found in bacteria.

Scientific: Pharmaceutical Research
Biotechnology / Microbiology

Tem-1 is a type of enzyme produced by certain bacteria. This enzyme helps the bacteria break down penicillin and other similar antibiotics, making them resistant to these drugs.


beta-Lactamase

An enzyme that breaks down beta-lactam antibiotics.

Scientific: Pharmaceutical Research
Biotechnology / Microbiology

Beta-lactamases are enzymes produced by bacteria. These enzymes can break down the chemical structure of penicillin and related antibiotics, making them ineffective.


Antibiotics

Drugs that kill or inhibit the growth of bacteria.

Scientific: Pharmaceutical Research
Medicine / Infectious Disease

Antibiotics are medicines used to treat bacterial infections. They work by either killing bacteria or preventing them from multiplying.


Gram Negative

A classification of bacteria based on their cell wall structure.

Scientific: Pharmaceutical Research
Biotechnology / Microbiology

Gram-negative bacteria are a type of bacteria that have a specific cell wall structure. This structure makes them resistant to some antibiotics.

PROJECT FOLDING PPD AVERAGES BY GPU

Data as of Tuesday, 14 April 2026 06:31:28
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PROJECT FOLDING PPD AVERAGES BY CPU BETA

Data as of Tuesday, 14 April 2026 06:31:28
Rank
Project
CPU Model Logical
Processors (LP)
PPD-PLP
AVG PPD per 1 LP
ALL LP-PPD
(Estimated)
Make
1 RYZEN 9 3950X 16-CORE 32 13,130 420,160 AMD
2 RYZEN 9 3900X 12-CORE 24 14,063 337,512 AMD
3 RYZEN THREADRIPPER 1920X 12-CORE 24 7,604 182,496 AMD
4 RYZEN 7 2700X EIGHT-CORE 16 9,449 151,184 AMD
5 RYZEN 7 3700X 8-CORE 16 7,505 120,080 AMD
6 RYZEN 5 3600 6-CORE 12 9,039 108,468 AMD
7 RYZEN 5 3500 6-CORE 6 13,269 79,614 AMD
8 XEON CPU E5-2690 V2 @ 3.00GHZ 20 3,334 66,680 Intel
9 XEON CPU E5-2630 0 @ 2.30GHZ 24 2,684 64,416 Intel
10 RYZEN 5 2600 SIX-CORE 12 3,790 45,480 AMD
11 RYZEN 5 4600HS 12 2,176 26,112 AMD
12 CORE I5-7300HQ CPU @ 2.50GHZ 4 2,587 10,348 Intel
13 CORE I7-6700HQ CPU @ 2.60GHZ 8 1,225 9,800 Intel
14 XEON CPU L5420 @ 2.50GHZ 4 2,169 8,676 Intel
15 CORE I3-6006U CPU @ 2.00GHZ 4 1,384 5,536 Intel