RESEARCH: Β-LACTMASES
FOLDING PROJECT #16454 PROFILE

PROJECT TEAM

Manager(s): Sukrit Singh
Institution: Washington University in St. Louis

WORK UNIT INFO

Atoms: 33,296
Core: GRO_A7
Status: Public

Related Projects

TLDR; PROJECT SUMMARY AI BETA

This project looks at ancient enzymes called beta-lactamases that break down penicillin. By studying an old version of this enzyme, scientists hope to find hidden pockets that could be targeted by new drugs to fight antibiotic resistance.

Note: This TLDR is a simplication and may not be 100% accurate.

OFFICAL PROJECT DESCRIPTION

This project studies the R241F mutant of Tem-1 β-Lactmase β-Lactmases are enzymes which break down penicillin-like antibiotics.

This is the most common method by which bacteria become resistant to such antibiotics.

This project is simulating the most probable common ancestor (dating back to around 2 billion years ago) of modern day Gram Negative beta-lactamases.

We hope to understand the funtional significance of various cryptic pockets found in these enzymes by comparing these results to simulations of modern beta-lactamases.

Finding such functional pockets could enable us to target these enzymes with drugs that might combat this form of antibiotic resistance.

RELATED TERMS GLOSSARY AI BETA

Note: Glossary items are a high level summary and may not be 100% accurate.

R241F

Amino acid substitution in Tem-1 beta-lactamase

Acronym: Biotechnology
Molecular Biology / Protein Engineering

R241F refers to a specific change in the amino acid sequence of the Tem-1 enzyme. This substitution is likely important for its function and could be studied to understand how this enzyme breaks down antibiotics.


Tem-1 beta-lactamase

A type of enzyme that breaks down penicillin and other beta-lactam antibiotics.

Scientific: Pharmacology
Microbiology / Antibiotic Resistance

Tem-1 beta-lactamase is an enzyme produced by certain bacteria that allows them to resist the effects of penicillin and related antibiotics. These enzymes break down the antibiotic molecules, rendering them ineffective.


beta-Lactamase

An enzyme that breaks down beta-lactam antibiotics.

Scientific: Pharmacology
Microbiology / Antibiotic Resistance

Beta-lactamases are enzymes produced by bacteria that confer resistance to penicillin and related antibiotics. They work by breaking the beta-lactam ring present in these antibiotics, thus neutralizing their antibacterial activity.


Penicillin

A type of antibiotic that inhibits bacterial cell wall synthesis.

Scientific: Medicine
Pharmacology / Antibiotic Resistance

Penicillin is a common antibiotic used to treat bacterial infections. It works by interfering with the bacteria's ability to build their cell walls, eventually leading to their death.


Gram Negative

A classification of bacteria based on their cell wall structure.

Scientific: Medicine
Microbiology / Bacterial Classification

Gram-negative bacteria are a type of bacteria characterized by their thin cell walls and an outer membrane. This unique structure makes them more resistant to certain antibiotics compared to gram-positive bacteria.


Antibiotic Resistance

The ability of bacteria to survive exposure to antibiotics.

Scientific: Medicine
Pharmacology / Public Health Threat

Antibiotic resistance is a growing global health concern. It occurs when bacteria evolve mechanisms to withstand the effects of antibiotics, making infections more difficult to treat.

PROJECT FOLDING PPD AVERAGES BY GPU

Data as of Tuesday, 14 April 2026 06:31:29
Rank
Project
Model Name
Folding@Home Identifier
Make
Brand
GPU
Model
PPD
Average
Points WU
Average
WUs Day
Average
WU Time
Average
1 HD Graphics 4000
[HD Graphics 4000]
Intel 657 514 1.28 18 hrs 47 mins

PROJECT FOLDING PPD AVERAGES BY CPU BETA

Data as of Tuesday, 14 April 2026 06:31:29
Rank
Project
CPU Model Logical
Processors (LP)
PPD-PLP
AVG PPD per 1 LP
ALL LP-PPD
(Estimated)
Make
1 RYZEN THREADRIPPER 3960X 24-CORE 48 12,484 599,232 AMD
2 RYZEN 9 3950X 16-CORE 32 12,521 400,672 AMD
3 RYZEN 9 3900X 12-CORE 24 12,477 299,448 AMD
4 RYZEN 9 3900XT 12-CORE 24 9,609 230,616 AMD
5 RYZEN 7 5800X 8-CORE 16 12,812 204,992 AMD
6 CORE I9-10980XE CPU @ 3.00GHZ 36 5,620 202,320 Intel
7 XEON CPU E5-2686 V4 @ 2.30GHZ 36 4,866 175,176 Intel
8 RYZEN 7 3700X 8-CORE 16 10,677 170,832 AMD
9 CORE I9-7920X CPU @ 2.90GHZ 24 6,855 164,520 Intel
10 RYZEN THREADRIPPER 1920X 12-CORE 24 6,680 160,320 AMD
11 CORE I9-9900KF CPU @ 3.60GHZ 16 10,016 160,256 Intel
12 CORE I9-10900X CPU @ 3.70GHZ 20 7,425 148,500 Intel
13 CORE I9-9900K CPU @ 3.60GHZ 16 9,231 147,696 Intel
14 CORE I9-7940X CPU @ 3.10GHZ 28 4,471 125,188 Intel
15 RYZEN 5 3600 6-CORE 12 10,110 121,320 AMD
16 CORE I7-8700K CPU @ 3.70GHZ 12 9,379 112,548 Intel
17 RYZEN 5 3600X 6-CORE 12 8,457 101,484 AMD
18 XEON CPU E5-2660 0 @ 2.20GHZ 32 3,098 99,136 Intel
19 RYZEN 7 2700X EIGHT-CORE 16 4,950 79,200 AMD
20 RYZEN 5 2600X SIX-CORE 12 5,717 68,604 AMD
21 XEON CPU E5-2690 V2 @ 3.00GHZ 20 3,403 68,060 Intel
22 RYZEN 5 2600 SIX-CORE 12 5,556 66,672 AMD
23 CORE I3-10100 CPU @ 3.60GHZ 8 7,152 57,216 Intel
24 CORE I5-9400 CPU @ 2.90GHZ 6 8,314 49,884 Intel
25 CORE I7-4790K CPU @ 4.00GHZ 8 5,734 45,872 Intel
26 PHENOM II X6 1090T 6 3,995 23,970 AMD
27 RYZEN 5 3500U 8 1,050 8,400 AMD
28 CORE2 DUO CPU T8100 @ 2.10GHZ 2 1,255 2,510 Intel